NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049081_10114638

Scaffold Ga0049081_10114638


Overview

Basic Information
Taxon OID3300005581 Open in IMG/M
Scaffold IDGa0049081_10114638 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)999
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F007470Metagenome / Metatranscriptome350Y
F019321Metagenome / Metatranscriptome230Y
F042890Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0049081_101146381F019321N/AVKDIITEAYADSDDQETLRAIAEALDIELTREVEWSATIEVSGTISVDLLEGDVDVEQEIYDNLYVDSQNGQIEIVDTEVTNVREN*
Ga0049081_101146382F000311GGAGMYFELTAPDRLSMEMAYWDAQMIGLDPTALSPLTFNIGTGSIEKVSKIRDKHNLIESYVSDYEPTGYTRR*
Ga0049081_101146383F007470AGGAGMDYKDGFEDGVKFAREVIILNLRSWAEETSDDGQVMDDIADRLEFGKVDYDL*
Ga0049081_101146385F042890AGGCGGMGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAAIKAQGRWSDPSYATRITIS
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Institute for Fundamental Biomedical Research
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