NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049083_10015600

Scaffold Ga0049083_10015600


Overview

Basic Information
Taxon OID3300005580 Open in IMG/M
Scaffold IDGa0049083_10015600 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2749
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F001043Metagenome / Metatranscriptome794Y
F003422Metagenome / Metatranscriptome487Y
F031384Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0049083_100156001F031384AGGAMPNWVYNGLTIEGSPEQVKSLMEQMNKPFKMVHDSWNMETHQQEKKLVTYPNPVFAFHNIYSYLDAGISEEDYLS
Ga0049083_100156004F001043AGAAGMFLNSNQQDTRGVKLSDYKEGFQDGYKFAREELMEKLREIDIRDIDSWLLNQLADMIEGNDL*
Ga0049083_100156005F000311GGAGMYFELTAPTKVAFARAIWEAEIIGLDPEKMDALTFNIGTGSIEKVTNLCEKYNLTEDYVSEFEPTGYTRS*
Ga0049083_100156006F003422N/AMTKYQKYTWVCTGDCDALIEYTYKDGFGWPNGVMQITCPCNSTCTLLSVEDATIPYTDTQLPTKEETMEETTVGTINDLLTPYQPDMLVTYKKISGYSDTEFLTDKVRNIEWELHNARTNSKIASALTNRISLVKDIIVEAYSDSDDQETLRSIAEALEIELTRDVEWSATIEVSGVIQLDLLADSDTDIESEIYDNLYVESQNGNIEITDTEVCNVREN*
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Institute for Fundamental Biomedical Research
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