Scaffold Ga0049083

Basic Information
Taxon OID	3300005580 Open in IMG/M
Scaffold ID	Ga0049083_10000006 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005580 Open in IMG/M

Scaffold ID

Ga0049083_10000006 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46108
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (72.88%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

46108

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (72.88%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002489	Metagenome / Metatranscriptome	554	Y
F003408	Metagenome / Metatranscriptome	488	Y
F004840	Metagenome / Metatranscriptome	421	Y
F008357	Metagenome / Metatranscriptome	334	Y
F030758	Metagenome / Metatranscriptome	184	Y
F037095	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_100000062	F003408	AGAAG	MPELIQTLQSMNKREEKERKFLAGLQGVNLDSTEEKEGPSFEDIRRRALGITASGDDVVSLQGAIATETGFGINAGLGYEVG*
Ga0049083_1000000625	F030758	GGA	MATVDKNFRVKNGLNVAGPATFSSNVVLGTTPLRFDTVTNKLQLELNGTWVPIAFNSEIPDTTQAISFMDIGLAIDYDGQPTYIIQANGVTPSGSSKYADGGSPTSTSWDMYFDSGEI*
Ga0049083_1000000631	F008357	AGGAG	MAVSKNFEVDQNATFIFEVQYTLEDEVTPIDITGASAKMQVRDTQGGSKLAFTLTSPSGGITINGPQGKLSVKMTPTQTNKLFYPKSSYDIMIIDSNGNKIKLLEGFMTLSRSVTI*
Ga0049083_1000000632	F037095	GGAG	MAKFNKSDLNKDGKIQMTEQILAALGTYARAFLSAAIALYMTGNTSPRDLLMGGFAAVAPVILKALSPSNKDFGFTNEAK*
Ga0049083_1000000637	F002489	AGGCGG	MDSKDEQSIEDNLPMVNYIMLHRIYDMLTVIANKLVGGDEINKMVEYHEAGYLLGPAPSYNAGLDEKE*
Ga0049083_100000065	F000258	GGAGG	MTANYKIDAMTELRKFLWNQLKEYSIFDPEEYYSDNLGKEIIPILPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWAVCCEQILFTIYSVDVTDINEIRNFMTDEFRRMDDSAKDVRLSGLVSDKIKFFSIYVADISPTSPSEELQGFLSADVVLEIKYSRILDNSGRFI*
Ga0049083_1000000654	F001562	AGGAG	MTQFERDLTIKESFIDLLNEIYPEVKIGYSTFTPAEILECCDPIAFSIGVIEHEDYMLERGELDDEEM*
Ga0049083_1000000658	F004840	AGGAG	MYKITCAYDSEPIHYIREYENEFGAWENFFLFTDWGFADEYSTVNLYTPTGKCHTKVFYREGRRVVVK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0049083_10000006

Overview

Ecosystem & Geography

Associated Families

Sequences