Scaffold Ga0068855_100563135

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068855_100563135

Scaffold Ga0068855_100563135

Overview

Basic Information
Taxon OID	3300005563 Open in IMG/M
Scaffold ID	Ga0068855_100563135 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1232
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024344	Metagenome / Metatranscriptome	206	Y
F048293	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068855_1005631352	F048293	AGGAGG	MEATARELPFPVWLAAIFGFAKAGFLALMGVIGVLAWNGVSDPWGIGSLIMAALFGIASYMLMRGNRVARIVLAALAVIGGVTAIVFAFIGPTSAILPSITTVVLDAIVLWLLYGVRSSKEYFGT*
Ga0068855_1005631353	F024344	N/A	VAFLRPGANGAPEVVVNFGPLTGREATLAEIDRLARRLLEVAARVRVHAVRTHDMTPETETIVHQVVAEADAAASDSGRLRDICEDWAVDCAEERSLEPLGL*

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