NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066704_10710562

Scaffold Ga0066704_10710562


Overview

Basic Information
Taxon OID3300005557 Open in IMG/M
Scaffold IDGa0066704_10710562 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)632
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017535Metagenome / Metatranscriptome240Y
F061174Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0066704_107105621F017535AGGTGGLLGKNPGADVRVFVVWFRMYPGDEESRWPREVLLDRRVIQTWDEPKAAGRWFMSHLSGLRPSRGGDGRFPQRDDALWDSYLLFDRDAAWDSTPTGLLSWGFTVMRTRQKL
Ga0066704_107105622F061174AGGMRRLISRSRIACAVLALATVLARIPLASAALEHLHGIDDMRGWFNAGKGHVRLILLLSPT

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