NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066692_10293296

Scaffold Ga0066692_10293296


Overview

Basic Information
Taxon OID3300005555 Open in IMG/M
Scaffold IDGa0066692_10293296 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1030
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013794Metagenome / Metatranscriptome268Y
F064037Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0066692_102932961F064037AGGMPASLSFDAAWRDLNHRSATLWFLLFGCIPGMFFLAYLLNDLLLQDAPLLLVALAWVTSVAWAGSRMASFVCPRCSRAFFENWYFFKPLRRSCAYCS
Ga0066692_102932962F013794GGAMNAWHEGVTAGGGLQGAIGFDSHMERRDWESAKHSIERTYGRSSREHRFTLDTLSAAIQSRRMLGPRLTYPRLT*

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