| Basic Information | |
|---|---|
| Taxon OID | 3300005545 Open in IMG/M |
| Scaffold ID | Ga0070695_100019395 Open in IMG/M |
| Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4142 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan: Kellogg Biological Station | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000719 | Metagenome | 923 | Y |
| F004395 | Metagenome | 440 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070695_1000193953 | F004395 | AGGAG | MSKYLLLLIVLLAAFPARAQEIEDTIKIKTRVVFLDALVKDKKTSLPISNLTSENFAVLDDGKPRNITYFTREGQARKPLALIIILDLRADGAGRFLKRTEILKSMEDELAKLPPDDEVAIMAMDMNNEDEERLWLTEFTNDRAQIAAALARVPAMCVSVEGAQPSTKAKVEPAQGEGKPDDIIETETIRGKNGAVIKRETRRDGRVNVSRTNKDGKMTIDVGDVYDMAAAVKEATRKAAELRPNSQTSIVWVSDGIAPIFFEDRDATQQILIRDNVIFNSLTVELRTLFKFLMPIGKPIAGWMGLSLYGSAKLLAQSSGGEAVKVGRVKDYGAGLSRIIGNLTARYSLGFALAENENDDGRMHSLEVRVNAKDEKGKTRKLQVSSRQGYYMSSTMPKDAATKAQ* |
| Ga0070695_1000193954 | F000719 | GAGG | MKTISAIVLTLLVLSIPVHAGDDDFKSVVKMIEQFYRVKPQGIPFLAKAGMKVGTTAAKIKGGEAKRIAEAGSVKLAVFEDQAFNGDFTKFRASLNGALNDMWIPLIQTLSGKGGEQNYIYLRNAGDKYNVLVINISERDATVVQVTVSGKNLALLLKDPEGTGKSITEEATINDQE* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |