NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068853_100004055

Scaffold Ga0068853_100004055


Overview

Basic Information
Taxon OID3300005539 Open in IMG/M
Scaffold IDGa0068853_100004055 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11277
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024088Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0068853_1000040551F024088AGGMSLALRLPPFADRPREAPEIRPSRLASWLTEASTREPAFAARIIGEALAATNRVAMSHSRRLDLTEQYWKTAALLWPRLEHRFIRASHPLQGDDLEAAKAALTLANELSTSYKRLLAGEASRRLRLGGPRRLVALVRRAFQATSRVLSNSYLTYAPVPAHTWYDAHEIYMFTRERKIHRHAVTIDQPDITLERLYTQSLLLALANPYGFLPSQLAVVLHYLEENAQLAKLTPVPPVHRMAKAVAIVPVGHDFPPFSANKGGNAEGTKLFLLTFDLAFELQEQIRAIESGATLPREAGSDADAR
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