Scaffold Ga0070734_10070569

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070734_10070569

Scaffold Ga0070734_10070569

Overview

Basic Information
Taxon OID	3300005533 Open in IMG/M
Scaffold ID	Ga0070734_10070569 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2078
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium 13_1_40CM_2_61_4	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000151	Metagenome / Metatranscriptome	1897	Y
F000174	Metagenome / Metatranscriptome	1764	Y
F009552	Metagenome / Metatranscriptome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_100705691	F000174	GAGG	MKNVYEVLRQKELELARLEKEVEALRVAAPLLSDDKDSGVEASSNKPTLAATPNTQQPIRIPQAAVNASPQTARAAGWEDTAKRWP*
Ga0070734_100705692	F000151	GGAGG	MRYEVNGSNGAVVGTFTRNGDPHVQEVVKTAHEELRHLMHQRAEIMKRIGTLKQTISGLANLFGDEILGEDLLELVDRKTGGRQPGFTKACRMVLMEAGRPLAVREVCEQIQQRLPAVLLRHKDPLASVTTVLNRLVEYGEALSVVRENGRRAWQWVSDPSSAESADAALRRI*
Ga0070734_100705694	F009552	N/A	REVKIQAQRSGGFMVQGLNGGEDVITTAPQDLKDGEKIKIKGQS*

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