| Basic Information | |
|---|---|
| Taxon OID | 3300005527 Open in IMG/M |
| Scaffold ID | Ga0068876_10309258 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 896 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio, Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006220 | Metagenome | 378 | Y |
| F007310 | Metagenome | 353 | Y |
| F013084 | Metagenome | 274 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068876_103092581 | F006220 | AGG | MKKFKKFVEELAIASGTEMMRASQMRPTTFKDKSKYSRKQKHKK |
| Ga0068876_103092583 | F007310 | N/A | MRTVLWNDTERWFNHHHYELLIEDITGFDLKQSLCAESVKYMAKRLKDTPYNRTFRSKYSIYQDEYKTLVEKFNNQAENNGKIEVA* |
| Ga0068876_103092584 | F013084 | N/A | MGIFSVLELMQETKEAVLARGHNVKNWLVLGNDCYALECSDCKMTCMVKEKPQPNEMKASGEALAMNCVKPVKEKKLRKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |