NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10150238

Scaffold Ga0068876_10150238


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10150238 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1369
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001019Metagenome / Metatranscriptome804Y
F001781Metagenome / Metatranscriptome635Y
F007644Metagenome / Metatranscriptome347Y
F062746Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_101502381F001781GGAGMKAEDKDKLNECLKILDTTDLGLSLVWLWTWSTIQGFRNDTNWEVVATEDEMWTHLCEAVEAGMGFSLEYGAEQHYEDVMQWMLNRDYMIDLLDDREEDEDEDE*
Ga0068876_101502382F001019AGGAMSYDTSLEILEVEYSCSPGGVDLFEVYDKTDIPLSVPIYETESLTEAVQFCYNLGKDFVVRTLAEYHDREFAYEG*
Ga0068876_101502383F000263AGGAGMNAEDIGLPPHLQRMVNADVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDTLAELYKLTYDLSFAIGIRTENRKDGHI*
Ga0068876_101502385F007644GGAGGLTKSSQFLEYMKLHLISLEQDLDKHRPEDTLLVEYIEGQIEATRHLLSVATDIMNNNERVYE*
Ga0068876_101502386F062746N/AMINAIHDSKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFD*
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