NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10018951

Scaffold Ga0068876_10018951


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10018951 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4371
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F001881Metagenome / Metatranscriptome622Y
F008358Metagenome / Metatranscriptome334Y
F039496Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_1001895111F039496N/AMTDISKLSFKQLQALEKQIEERKQVLSESKDCVEGYKVTFCVKFNPATNPYSDLRSPEDFGDYLANEIANVLVNDFGLRQSDVSGFEVEEMTDEYKVEWKDFWEDEE*
Ga0068876_100189512F008358N/AMNSTYIYFVIFFCIAYLIVTDQSVARAFYMLTQLAKVEYEKTKWWILHNPANPIVKYLMWRRAYKLAEELQREIESRNK*
Ga0068876_100189516F001881N/AMTTRVQEFMNAVWEHRNNGADTEEKLVAAILFIAAENIQFYNAQDGRIVLDKNDMLQLAQELEE*
Ga0068876_100189519F000919GGAGMRFREVQFRWSEFNKKYELVRWYKDCNDKELCYVVAFFDETKEGYDMRTVGDRFFEDKDAFIVGKHAIEFLNSMFYELQREEELK*
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