Scaffold Ga0068876

Basic Information
Taxon OID	3300005527 Open in IMG/M
Scaffold ID	Ga0068876_10005437 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005527 Open in IMG/M

Scaffold ID

Ga0068876_10005437 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8802
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (85.19%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8802

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (85.19%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002052	Metagenome / Metatranscriptome	599	Y
F005701	Metagenome / Metatranscriptome	392	Y
F009334	Metagenome / Metatranscriptome	319	Y
F010749	Metagenome / Metatranscriptome	299	Y
F021758	Metagenome / Metatranscriptome	217	Y
F034569	Metagenome / Metatranscriptome	174	Y
F088343	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000543714	F021758	N/A	MKVIKLDRRYSGHGTWTHRTNGGAWYGEEARAQGLVAFYDMRCYMTQMNGPGCFIHEAWALKKAGREVPEWAWDTDGNVFFRESALVNFTLAKERWL*
Ga0068876_1000543715	F002052	AGGA	MTRKYEFKFTIECASNGTPDMDRVEHMIDLNMQDLVFDDEFIAALDEKESVSIQVVPQFGKPNS*
Ga0068876_1000543717	F005701	AGGA	MFTQCIAYAKLVYNKKINAYKVQIAFNVHKKLVGTNYKYSFPVQSKCNYVSGDLLAENLEAEVQRTVAFAQQNLRTTQIVFVD*
Ga0068876_1000543719	F088343	AGGAG	MYNFSTLTQAQKDAMQALVNKYAHVEGSYESTMLGGIVHAYCDSGILTDAYSVQDAELVAMYFTQEAQDSGYLELFNNFIAEVHGEELLCCKVIDEMCAIIDDVELASAYVGKLTDTLMEHCYTE*
Ga0068876_1000543727	F034569	N/A	MNKTNETIQWLGTAFILGMYVISNFFPGYDNLRNAVALVGAACFFTWSYRVANKQQMIINGVAIVLCVVGLLKAVI*
Ga0068876_100054373	F009334	AGGA	MTTATVDGHTVKVGDWVGFKCDIEQSGQIVEIKKSYMGYSLVLENKTGFHGDYIGGQTITTEQASDCWID*
Ga0068876_100054374	F010749	GGA	MKRFTFWRNAIVSEVYVVECESEEQARTMLMNGEVEVHSEEWMDWATRDFELEHEEIIDPLYLMIKQHTQKETV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068876_10005437

Overview

Ecosystem & Geography

Associated Families

Sequences