NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068877_10032273

Scaffold Ga0068877_10032273


Overview

Basic Information
Taxon OID3300005525 Open in IMG/M
Scaffold IDGa0068877_10032273 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3578
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002827Metagenome / Metatranscriptome527Y
F005146Metagenome / Metatranscriptome410Y
F006743Metagenome / Metatranscriptome365Y
F010680Metagenome / Metatranscriptome300Y
F016263Metagenome / Metatranscriptome248Y
F088554Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0068877_1003227311F002827AGGAGGVNKEYYQAKADLCRDLAIKQMVEGDSKEAGANLIRMVNALNELQLINYKEEKNETV*
Ga0068877_1003227313F016263AGGAGGMPKCGVCGWNFSDRTLTKHAETACGLEEEKADRVAYSPEIDDLIKEMEESNEYR*
Ga0068877_100322733F088554GGAGGLTEKYSWYKAALRRKKIEEAKRLKAARYVDEMNKRANDKSTTSNTQ*
Ga0068877_100322735F010680AGGAGGLAIVIQLSQAEVRVCALIAVERWLVKFGSEDRPNYASGKKFGKLEPEINANIRANVAEWAVARHYNLGWNMPWYPNDLHKQRKNISDVGDLEVRTVRTQSAIPFWKKDVGRTIVGTKVLDEEYYSLVEIYGKFQADDFMIEQFSDPSIDGWRVPVELLEV*
Ga0068877_100322737F006743GGAGGMKIEKEPRPMRGLRLVGEDESGSASTIYGPVRAGLTTSHRTLEAALLESLKCLEREVETLNSKYCEAYVTLVSVMEHLVRLIAIINAKDTTD*
Ga0068877_100322739F005146GGAGMKLVNFYEVMDRKGDIAWGGASPSDAVEWFRRGLDNSIFVSVWNEQDIENPVLVTDKIEVTALVLATITSERSRG*
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