NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066862_10087331

Scaffold Ga0066862_10087331


Overview

Basic Information
Taxon OID3300005521 Open in IMG/M
Scaffold IDGa0066862_10087331 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1072
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002928Metagenome520Y
F019662Metagenome228Y
F058216Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0066862_100873311F019662AGGAGGMTEQEKKDFEWASGYYLYDDLDADWVNWDEEKLHNEIEQLAWQPFEHWEGDKLYIEIEKLASGVREYIKENK*
Ga0066862_100873312F002928AGGAGMKNILVQFDCRIGDYEHQSYYIFNKKKSEWGYCKEFWSINKRDSNCLKENMFWDNEMMNAISVYSETEITNKQADTLQQLGVA*
Ga0066862_100873314F058216AGGAGGMPIRKTVGQLLVENHWSVQRLAVAINITKEDIKKWEKLNKQYKKYKR*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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