Scaffold Ga0070706_100000859

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070706_100000859

Scaffold Ga0070706_100000859

Overview

Basic Information
Taxon OID	3300005467 Open in IMG/M
Scaffold ID	Ga0070706_100000859 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	33463
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (88.89%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005317	Metagenome / Metatranscriptome	405	Y
F033163	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070706_1000008593	F033163	AGG	MENTDPSPIIGVFRDHAKADNAVVELKQAGFREDQIQSAVVSLQTAQEEQTPENTRIIVTVNADGKDKEAFGVLFNSGANNADLPPGLSLIDGNIVNSQAETVDLIAKPTLEAGFSKDSYFGEVNVPGTSDEPGILDEH*
Ga0070706_10000085934	F005317	AGGAG	MSTRDAMRRLISPGSYVLFLFFLAGIWLTISPFAMTTQPSGSHWIASTVNSVTIGALMMVVSLLGILGYMLFALRDLIRETQAKQAAEQQASQLAE*

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