NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066856_10000476

Scaffold Ga0066856_10000476


Overview

Basic Information
Taxon OID3300005404 Open in IMG/M
Scaffold IDGa0066856_10000476 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14902
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004144Metagenome / Metatranscriptome451Y
F005433Metagenome / Metatranscriptome401Y
F022758Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0066856_1000047611F004144GAGMIQWLKKSIHHLKVETGWGYFYHLWHSLCNSWALIVIAFKSVVHGLFPWIWKADAPKGVIRMYHQIMRIEHIEKMDKLRKLPKDERYKSNKPIDPIE*
Ga0066856_100004767F022758AGGAGMSTLPATGSNISMSTVRNYFGLSGTVSMSTLGSTISPSVTSNIKLSATFGGWQYPSPSGSHP*
Ga0066856_100004768F005433AGGAGMIRTRYEIETFVLGAHPSPARKAQVLTEELMKARETKHPDLPILEAIYKDFSAEHNVEELSKDIESTEEEYWVHRLAKLAAIDILTIGKVQPEHMAYMVALPDEAFKASVKEATSIAKQLNYEVQQIEAELQADLASAK*
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