Scaffold Ga0070673_100013215

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070673_100013215

Scaffold Ga0070673_100013215

Overview

Basic Information
Taxon OID	3300005364 Open in IMG/M
Scaffold ID	Ga0070673_100013215 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5700
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070621	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070673_1000132152	F070621	GAG	MISDKRLPEARPCHEPDVVAAAGRSSLVEWAQRAILQSEIASARELAGLTDAELTHLENEFSGCRTRPRPAWQRDAVPLGIAFLLLAGCAFAAPEYLVRLSDFAAQLVRIAGAALVLIGVLALSARYLASFTGAPLDRAYSTLGLYVSQLQDRHPWLYETFSVARHEAVDEYRCKVLNERGLLRGADYVLMCEIVRVHEALDRARPANFVVEALQLLPAPSSPVDDGGTAEPRLVPVAAGWRGQA*

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