NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070661_100420369

Scaffold Ga0070661_100420369


Overview

Basic Information
Taxon OID3300005344 Open in IMG/M
Scaffold IDGa0070661_100420369 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1059
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001131Metagenome / Metatranscriptome768Y
F034087Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0070661_1004203691F034087N/AMKSWVLHRVAGRSDLPPRDSRHLHEPDLDIDAAQRHGDAGAAADPLRAGADLGVYAPLIGAVRDELEHFVASHVRLHVVIAERDRFMLTSIGVRSPGGAEARELLQQFMHEFRPEQVKRYLAREVIGRLPNAAVIDLSQFAG
Ga0070661_1004203692F001131GGAGGMSRLSAAPRPAWPDREFASPRSRERDIESLPPPLVWTFDGPFERCLDDLDDSLRRAIVLIGDVARVALLIDLSLPALLARVRAGDRVQPAWGRFTERIAGYGLPTFPRVRHLRAPGPLATLVVAYRS*
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