NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070660_100064928

Scaffold Ga0070660_100064928


Overview

Basic Information
Taxon OID3300005339 Open in IMG/M
Scaffold IDGa0070660_100064928 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2840
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004652Metagenome / Metatranscriptome429Y
F092453Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0070660_1000649282F092453AGGAGVRRASLLLVLVSALALGGVAAATTVPPVACGGTCDPGSGYTGCKSLSASHSAGVWGVYSIRHVLVVSYCKQNGVITSISIAAHYCDVGGFVSCTATAAWKTGGGVGATWATFEAHAQWTVTPLHIYNNTDVIGLTVPTIDG*
Ga0070660_1000649285F004652GGAVAETIEIDVPRRGIGSELSEALASRGLTAEIVDADDRCALHVRFAADERERLLDDAVRAIEAYCSERMLPFVVQRANGGAVVRPPAD*
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