NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070680_100017824

Scaffold Ga0070680_100017824


Overview

Basic Information
Taxon OID3300005336 Open in IMG/M
Scaffold IDGa0070680_100017824 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5602
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Hyellaceae → Pleurocapsa → unclassified Pleurocapsa → Pleurocapsa sp. PCC 7327(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018688Metagenome / Metatranscriptome233Y
F082409Metagenome113N
F093429Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0070680_1000178245F093429AGGALGVLKTENEFIGFIRDDTFEIWERQKRAIHGRGTIRGLRGGSRIEMRLAPRGPTKLLVGVFFGLYAIVAAGIATLPPRPDIGIEEVAIAVGGAVLLAVIFAAGAAQQRADLQRFLERTFSEVPRL*
Ga0070680_1000178247F018688N/AVTQLADEEATRILNGFQRDARAMLEQLLPMLRNRGLYPEASVDGWGDSRGGRGTASTVVMTSPKWLKPTDRTKQLARVRLELSEANEWTVVISVVAQTDQRDAWPPADATGWWTATRERVRAQIMEYHDTKAEPQETKVQPLDPKDDPLV*
Ga0070680_1000178248F082409N/ATRGSKGAAQAEARYAINPTFVWITARDGSVHATRPPIIADGQVMLCGPTYDRRDLRIRMQAAVGLAPAGACTVCGELVAAALGETETPARTERERKPPLWP*
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