NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0065704_10365129

Scaffold Ga0065704_10365129


Overview

Basic Information
Taxon OID3300005289 Open in IMG/M
Scaffold IDGa0065704_10365129 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)792
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location NameEast Lansing, MI
CoordinatesLat. (o)42.794771Long. (o)-84.393804Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020968Metagenome / Metatranscriptome221Y
F026506Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0065704_103651291F026506GGAGMKMTNKDTPVGDPDGDDEGTCRLAVCNKCFAISNKVVRTKTDERALAAGGAKWEAK*
Ga0065704_103651292F020968GGAGGMGGEVKIISRTYRKINGKYYARVRYKIDDGKPLDILRQVENKSAIKPKQAEIEVELLKNGPAQLVAGKVTFRQLAQHAKDNIYVSALYDNQETKIKGVRSVVPAHSALNNLVAFFGDVDIRKIN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.