| Basic Information | |
|---|---|
| Taxon OID | 3300005239 Open in IMG/M |
| Scaffold ID | Ga0073579_1403998 Open in IMG/M |
| Source Dataset Name | Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | J. Craig Venter Institute (JCVI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 815 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gulf of Maine, USA | |||||||
| Coordinates | Lat. (o) | 43.2393 | Long. (o) | -68.368612 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002093 | Metagenome / Metatranscriptome | 594 | Y |
| F099434 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0073579_14039981 | F099434 | AGGAGG | MPITKNNFVHGTNMELEGVETSTFVVDFVNAMTNETSDLSSGSATAGLEATRAVISRYINILSEGPLHESDKQKTYTVRTDSLGTLISGGTYRQ |
| Ga0073579_14039982 | F002093 | AGGAGG | MAYDATLPAGGPGNFVSPNTAHEADGVEVDFITVDYISDVSGEVTNPRASAATGALELSMQAIQNQGVNILGKGVLSNSDTEQTYMVRRDSLDTISSTTTVAAIQAAVRALNAMTPDKVTATISSATAADRDMGDTSVGA* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |