NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073579_1190067

Scaffold Ga0073579_1190067


Overview

Basic Information
Taxon OID3300005239 Open in IMG/M
Scaffold IDGa0073579_1190067 Open in IMG/M
Source Dataset NameEnvironmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44038
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (30.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location NameGulf of Maine, USA
CoordinatesLat. (o)43.2393Long. (o)-68.368612Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006200Metagenome / Metatranscriptome379Y
F013232Metagenome / Metatranscriptome273Y
F015402Metagenome / Metatranscriptome255Y
F016004Metagenome / Metatranscriptome250Y
F061837Metagenome / Metatranscriptome131Y
F070147Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0073579_119006732F015402N/AMGRTKNFLDGLNLNEEELNEELYSRADSDYQYQKWLESKEFVEYVNGELDSTRPRYSEHDIMSATRYASEHITIEPSEVGKEVYDMLFSEKIEEYLTCVSYS*
Ga0073579_119006733F006200N/AMSKQKQDWLEELVKKYSIPTEEKTDKRGMLNETQLKNLKNGKN*
Ga0073579_119006734F016004GGTGGMNEELLKILETLKEDFEMLQDGTWDLNYSDGSEIQASLDNVEKAISIVKNE*
Ga0073579_119006735F070147N/AMKDVLVLILKAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKKMIDTIENGGIK*
Ga0073579_119006736F013232N/AMSDREIMNAKSGIPMWWKPGIAFLKEDWINHPHLKQFKNKECTDRSCNCESPKIVNLWNHDSCVRGRIDTDVCVKCNEVQSFSIIR*
Ga0073579_119006743F061837GGAMSKVKQPIRFTKEFSPKYNSPAMKASLLEQGWKFKGTNKDNPIFEYYHT*
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Institute for Fundamental Biomedical Research
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