Scaffold Ga0073579

Basic Information
Taxon OID	3300005239 Open in IMG/M
Scaffold ID	Ga0073579_1175033 Open in IMG/M
Source Dataset Name	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005239 Open in IMG/M

Scaffold ID

Ga0073579_1175033 Open in IMG/M

Source Dataset Name

Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

J. Craig Venter Institute (JCVI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23002
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (54.55%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

23002

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (54.55%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location Name	Gulf of Maine, USA
Coordinates	Lat. (^o)	43.2393	Long. (^o)	-68.368612	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gulf of Maine, USA

Coordinates

Lat. (^o)

43.2393

Long. (^o)

-68.368612

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014505	Metagenome / Metatranscriptome	262	Y
F016957	Metagenome / Metatranscriptome	243	N
F024891	Metagenome / Metatranscriptome	204	Y
F025860	Metagenome / Metatranscriptome	200	Y
F083262	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_117503319	F024891	N/A	MIIVEEFTNPTIKMYLRDFTTESFEIEIISESDKEDIYDAISGTYDSFRKTLSFSYDTSVLYPENFYIIKIWEVGKVKLLSQDKMYVLPSGSEVGTYQPKLTTTEKTMNNEYKIYGE*
Ga0073579_11750333	F016957	N/A	MHLRKYLKEGRNLSDARTAICVDVGKSGEALFKELTGAIKSELADDKQHIDFYWGDKKVDVKGLKKMHHSGFILLEFINVWGGNGWCSKNSKAEFIAFQFPNKFYVFKKSDLRERALELCEEFDQDKVIRKNWIPYDDAKYKWVGRYNAQDVFTYLKISDVDDLIYDLLPYTIKE*
Ga0073579_11750334	F014505	GGA	MDRIENFYRKNFKRLTGFIKQYTDGSYDIASDIVQMVFLRLLELEQEGRTNFYEDDSLSFFYVYRSCINTALKYQRAKKRIQKVDIDDLENHSYETYPEERDAMEKLILMMEKEMEDMHWYDSKMIRIHMEGNSMNKIHRETDIGLTSIKNTIKNGKAKIYDQIKEDWEDYENGDYDKI*
Ga0073579_11750337	F025860	GAG	MNTENIYQIIDDLEGFAQQIGSEWMKERLAMLEAHLAQLENNQSIK*
Ga0073579_11750339	F083262	GAG	MRDPNIDRYLHEMAMLFQNLGIDSTPEERIYAKEEERRYISKIYELDAEVGKRLGYD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073579_1175033

Overview

Ecosystem & Geography

Associated Families

Sequences