| Basic Information | |
|---|---|
| Taxon OID | 3300005239 Open in IMG/M |
| Scaffold ID | Ga0073579_1169076 Open in IMG/M |
| Source Dataset Name | Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | J. Craig Venter Institute (JCVI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21750 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (36.36%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gulf of Maine, USA | |||||||
| Coordinates | Lat. (o) | 43.2393 | Long. (o) | -68.368612 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F076523 | Metagenome | 118 | N |
| F086197 | Metagenome / Metatranscriptome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0073579_116907611 | F086197 | N/A | MKTNYKNNNQDGMALVITLILLLTLTILASSIFMTVNRYAETIDNISSRPQAMEAANSCIDQALDWLATSDGASWLNGDTPIDLAAEGNPLNKKTVLEDTTMEGVTRGDMFSKVLEKSSCTKVILTKVSSESARGERDGGEIGSETSYGSSVLKYALKIEARGVFNVPLNSSGTAIKFDNWNSTSNIVDVEVHVGYTSF* |
| Ga0073579_11690767 | F076523 | N/A | MMIKLKITLFILCIVSTLSLRAENRFETLCWDAMVDMTNQYSRSEKINNAEVYRWVNDNYVYKPLKTFLKKKWLITLKSNKDFTLNNLYVMKDKYLSSCVAAISKTK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |