NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073579_1092298

Scaffold Ga0073579_1092298


Overview

Basic Information
Taxon OID3300005239 Open in IMG/M
Scaffold IDGa0073579_1092298 Open in IMG/M
Source Dataset NameEnvironmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1761
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location NameGulf of Maine, USA
CoordinatesLat. (o)43.2393Long. (o)-68.368612Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005491Metagenome / Metatranscriptome399Y
F011658Metagenome / Metatranscriptome288Y
F014834Metagenome / Metatranscriptome259Y
F021776Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0073579_10922981F014834N/AADAYIEQKANEMYAIHQEISDFTGTSASFIDYITHFNSYDTAAPENKSNHKAYASAHETKKKYRLELEMNYKSKLVAKYTKELIMKLDIFE*
Ga0073579_10922983F005491N/AMSTFYKDTRFEGKLVRLEDVIDVVYARALETIDESLYELLNNTEDDEFYMDYKEAFGDVVDKLQAFQNGE*
Ga0073579_10922984F021776N/AMTKDELEVKISTLQNLVMQKNEELTQYAQQIDTLNKELKDINKPRLTPLQFDELHEAIEEAVGSFDFDDSDNYDTDFHIDYDNRIAIESMQFQNADELARELYNSISELFAEATHPENDNQLNQD*
Ga0073579_10922985F011658N/AMKTLYQQLKPEIKQSLKEQEELYPTLVKGIKCALQENYLWSHLSIGQARDLISFTSISLGSMSSYDWSYGEKFLVCED*
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