NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066675_10111338

Scaffold Ga0066675_10111338


Overview

Basic Information
Taxon OID3300005187 Open in IMG/M
Scaffold IDGa0066675_10111338 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1824
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009321Metagenome319Y
F025244Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0066675_101113381F025244GAGMLAVRLLLTFAIVLSLVSLPSVLSSNVFLPKIPVVRAQQETSAGLWYPAGAQEQTLSISQGDGAVSTQVSWLLTNQVDSEDWPLTATQQGASTVNCSGNANVLCSLPVPDHGYFEIEFNLANVLWSIPMQYGNSAAGIELRQGIAHLFNKASFAANNPACLSTVCNPNDSPIPVCTITAGCGNGGLPAANPCGWDTKYAESSTTNCVVGAPGGSAYNCSFSAACPTGVPTGTTTFAWQAQIGSPDFCAAAQHFITAFADANITGVTTNANCEL
Ga0066675_101113382F009321GAGMAEDRVEARDKAVLNTVYYCETCNVIVELGDADISIHKKDLPHHRMRRVMILRCSRCGNVVTDSYAEYSPEKNQFWCKNCISEAGVEAFHSN*
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