NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066676_10032290

Scaffold Ga0066676_10032290


Overview

Basic Information
Taxon OID3300005186 Open in IMG/M
Scaffold IDGa0066676_10032290 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2856
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005305Metagenome / Metatranscriptome405N
F013020Metagenome / Metatranscriptome275N
F023903Metagenome / Metatranscriptome208N

Sequences

Protein IDFamilyRBSSequence
Ga0066676_100322901F005305N/ASLREDEDLKKEFSKLSKDVIEPVMRKFESYLKSKDVNSSVNVRSEIISGKNPSIEFILHFKLTHESRYPNIKFSSSGEKISIQEDRLITKGEVRQDMMLEYYDKEQITEEFINERLIRLIKSCFDKNWQSIYS*
Ga0066676_100322905F013020N/AMKGYIIKQKKSPDNNSNDKREQLKLDALNKIFGWIEDKETKAVMINKYYNNKEHRAALKAFLDDMVKALDESTAETNSKEEIKGQLSYIT*
Ga0066676_100322906F023903N/AKICDNCGDSVDQLVPLNDPTRIGRWWCLKCIYKEGKAKFDADAKNG*
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