| Basic Information | |
|---|---|
| Taxon OID | 3300005179 Open in IMG/M |
| Scaffold ID | Ga0066684_10120465 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1633 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011501 | Metagenome | 290 | Y |
| F016853 | Metagenome / Metatranscriptome | 244 | Y |
| F017357 | Metagenome / Metatranscriptome | 241 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0066684_101204651 | F017357 | AGCAGG | MTARGLYKAADGSWRQVEARPGVRLLYTLKRGERWALLDDDRVIVIRPDRPPKIVYPDGRVEQIAPTPLSRSG |
| Ga0066684_101204653 | F016853 | AGGA | VGEYLERAAMLRTLAAKTRYPDVRQRLLGLAAGFERLADQVEKWDEARLARAAD* |
| Ga0066684_101204655 | F011501 | GAGG | MLIIELTRGPSWQEPAETILHRECETESMEFAAAEALHWLINTQKNVPCRGATHYRVVGEAGAVVGGPP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |