NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066684_10029626

Scaffold Ga0066684_10029626


Overview

Basic Information
Taxon OID3300005179 Open in IMG/M
Scaffold IDGa0066684_10029626 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2963
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013327Metagenome / Metatranscriptome272Y
F018998Metagenome / Metatranscriptome232Y
F089248Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0066684_100296261F013327AGGGGGMGEPKGSCERELRVGARVSLDGRGGVLRYFYGNGAAVVRFDQDANTKVVPVRRLVACTRERPLPDA*
Ga0066684_100296262F018998N/AMAETPARITVTFQDIEVTATKGRLWHVEAAGRSASAEFLDQALDLVLPRLSYEELDQLLIQLLTAAMTGPT*
Ga0066684_100296263F089248AGGAMRVRILMALSVALLLAIGATTAAAAKKQTFAASQQLCENAGGTFSTKANSSFYRPFCEKQGVLWTCNSYTDSTATQALVQSCFGDGGQAARTDVAGFATCWKNP*
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