NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066677_10006856

Scaffold Ga0066677_10006856


Overview

Basic Information
Taxon OID3300005171 Open in IMG/M
Scaffold IDGa0066677_10006856 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4724
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000399Metagenome / Metatranscriptome1182Y
F002134Metagenome / Metatranscriptome590Y
F007456Metagenome / Metatranscriptome351Y

Sequences

Protein IDFamilyRBSSequence
Ga0066677_100068562F007456N/AMTMPRALLIVLLTLAAVALPAAASSAPVSTSFKIAGYEYAFTSTVGSFAGNGSGDAGGTAYWNATVKHDRLGSDPTYVNGGSFAMAIRGPGSSVDAVVGTFTHHGGKIMTLDRGANCTNQKYLVADTLNAVSTPTTSNGSGNFMVTLTHYRHRFLGRCVAYKARVSGQVRFAY*
Ga0066677_100068566F002134AGGVEVVFEVASEPYPLDERVATLMAENLRVKAAQEPDAEGLGARAVADAIELRLIEDTADPITLGGDGAEAVFYALLAPARGGEPPWALYHAVKRLHDERVRRKS*
Ga0066677_100068567F000399AGGGGGMAATVTQSLVQQFASMKPTDFARTIEPKWQVAQRLVKEIQGAVEKGHLTPLDGARTISAVAATLFGYDEFILREISPETLLATTPSRR*
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Institute for Fundamental Biomedical Research
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