| Basic Information | |
|---|---|
| Taxon OID | 3300004951 Open in IMG/M |
| Scaffold ID | Ga0068513_1000309 Open in IMG/M |
| Source Dataset Name | Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4565 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | East Sea, Korea | |||||||
| Coordinates | Lat. (o) | 37.0 | Long. (o) | 131.0 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F003659 | Metagenome / Metatranscriptome | 474 | Y |
| F006697 | Metagenome / Metatranscriptome | 366 | Y |
| F010159 | Metagenome / Metatranscriptome | 307 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068513_100030910 | F006697 | N/A | MANQVNKLAYVDSKLGVSLPGQQTTRVIYDSVNAAAGQQFFEFFTNFAGKTEFQTNLTTNKLDSAESMVIKSIQIIMNSATSNLADHLNLNVTVGNQVVIKDFDPSFNASNKGLSFDRLHSGFNSSTNLELRLLTDIVIPPQVNFKATLQLSNALLALNDDITIVFKGYGRIFSAGNSF* |
| Ga0068513_10003092 | F003659 | N/A | MPTAADVLGRYLIAREDVPVYDLPNGTRIGEIKKGNSTAEVYSYVVRGGQVWWMFDYTIPGQAPGAYYVLQKDGRFSLSAAPGNVQVTTAQLAPVDVFPGINKNLFVYGGLGLLALLLITRK* |
| Ga0068513_10003098 | F010159 | N/A | MSWQIPTLIEQDIKNGKAQYRTFQTGNGGQSILPVPSNSYVVIFGYDFSPAGGGLKAVSAELASQGVDRYQLTKDFLRWFETQQISFYTGTDFYPFIHHVDVKTTALIDTIDNNPVTEANTVRLNQIIEEINNSPIARQVYITSTNDVTITHGCILNATAISTNPIPVTNRTPQGLTYGGSAQNVNTQTNYGPAGTPLQFMQPSPKDYQDFAFGLLPANADGQAFATPDLFNGLRDATNLLNALGASYQSAAAANYYLNLHYALYTETVPEYRG* |
| Ga0068513_10003099 | F000710 | N/A | MASNINISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIRFSSTTSAAPSVAVDAVQLRVTLTINNDVVIDDVAAFDLGANAGAGGVTTGFPAFIPFPRALTGQDTILLRVTNSSGASQILNATVYYKNEI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |