Scaffold Ga0062595_100015729

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0062595_100015729

Scaffold Ga0062595_100015729

Overview

Basic Information
Taxon OID	3300004479 Open in IMG/M
Scaffold ID	Ga0062595_100015729 Open in IMG/M
Source Dataset Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2684
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location Name	Wisconsin, United States
Coordinates	Lat. (^o)	43.56	Long. (^o)	-89.32	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000603	Metagenome / Metatranscriptome	994	Y
F027930	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0062595_1000157291	F000603	GAG	MAKKIVNIRLRPDQEERINAIVQRSAILDTSKFVRIAVDWLLRSDIGEVIKTIVDDEAFPDYQLPKKTTVRKKRKP*
Ga0062595_1000157294	F027930	N/A	MKKIITTVALALAAISGAHGVIGDNPERLATRFKTKPIVVEQITPRTIKVVYVEDGWITDVTLLDGISKAELMARTDNGLVGCEDMKAQIAHYGGNFEMWKQQKLWNEDLFAWVQPDGKLFFAVGKTTFPDGKKYNWLMIFETPTWWDGRAKEVARALNEGKTYL*

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