| Basic Information | |
|---|---|
| Taxon OID | 3300004463 Open in IMG/M |
| Scaffold ID | Ga0063356_100034419 Open in IMG/M |
| Source Dataset Name | Combined assembly of Arabidopsis thaliana microbial communities |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4930 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Walnut Creek, California | |||||||
| Coordinates | Lat. (o) | 37.931388 | Long. (o) | -122.021761 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F069981 | Metagenome | 123 | Y |
| F079767 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0063356_1000344192 | F069981 | N/A | MRRLAIPVLLVVMLNVRAAAQTPDDSGYVKISPAVGLHYGTPLKLSVAAGGLFDFRGPHNDGVIAMAEMGQGGAEASVGYFRMIRFGQGFDVRFAGIRTGPDPRNAAPETTYLGAEAHLMFLLGVGGRVGWFHRVSPYTGEKTYDNLLSFGASIGL* |
| Ga0063356_1000344193 | F079767 | AGG | MTAPRPPLPMSTSLRPALALLAGLGVTVLIVFVGVTVSTLAALRGVDPKTYVPPAWTYPTHLAISALGALAGGFTTARITIGRTLFTTLVLALILLMSALAPVLRRTAGAPGQPAWYAPSLAIASPIGAMLGGILERRRGRARRAAAPV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |