NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066223_1346666

Scaffold Ga0066223_1346666


Overview

Basic Information
Taxon OID3300004461 Open in IMG/M
Scaffold IDGa0066223_1346666 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1444
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008453Metagenome333Y
F026537Metagenome / Metatranscriptome197N
F068220Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0066223_13466661F068220N/AKTLEQAKEHKDRLLALLMKDEPEEVITLSDGTQDIIVMNDDESYHEILKIVEVNPLWDTDKPDPANSNVREWLMWNQMDTEVMYDGEFLPTDMGCIKEATDALYGTNESMLMEPWAEFVGGMFYRGEAMLDADDVCIHFFRVPKSDTL*
Ga0066223_13466662F026537N/AMNKKYHMKQEIIDRLEYVEETYAGEMETWRDPVTEAYYHIPIEIVRDWDNSELLESNKQNTMTHERKEQHIKQLAFSINHGASGYVTDNFVIEDLPTPQRTGTMTQQDTYSKHKARQIFEAFLEQNPNIND*
Ga0066223_13466664F008453N/AMTNYAVYRVFRDWERRPEVLMDGLTREQAQTIVKNTPSDDRSMVVFDEE
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