NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066223_1112988

Scaffold Ga0066223_1112988


Overview

Basic Information
Taxon OID3300004461 Open in IMG/M
Scaffold IDGa0066223_1112988 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3982
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008384Metagenome334Y
F013231Metagenome / Metatranscriptome273Y
F016811Metagenome / Metatranscriptome244Y
F024348Metagenome / Metatranscriptome206Y
F056899Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0066223_11129881F008384AGTAGMPRYDKSLIEREAILSVKQGSLTNNLGIFILQRCKEIAASAFVTDGNNELKQALIDAAVMRTCEKFLHYYTEGKSAANLVISIIYSTMTNKIVSLNHSDVYGHNIKGYLTYIEDGEAVTKLMRYIKDDYLSEKL*
Ga0066223_11129882F024348N/AMLIEEKYEDLTDAEANLILDLYRVIDELVYFGQPVTLVRFGFELGINTQELSDYLPIIITILNKVEEQYAEVRQVAD*
Ga0066223_11129883F013231N/AMINQRNYQTCKLVKNRVDLYLYEMSILFANLGTDSTPEEVHNAYKKEGEYIELIAELDPDKARRLRSS*
Ga0066223_11129885F056899N/AMSRNTFVRASISGDYGQDLVMKYLEDKGYEVEEAPKKLFYDWDVKGVKNGRTVTIEVKYDSKAYMWAARRGTPEQPNLYIEFRSTTKDADSGILKSKADFYFYILKTGDKDIAFVFDRVQFLQHLQMSNYKVVGNGATGDNNAQGWIPPLHELLVSRYGYKATIDLTEYA*
Ga0066223_11129889F016811N/AMSNEGQMIYDVGVRLAWKKKRGNGYVNMYQGTKDRPFQFVTRAKSLDHINRNPEMIAKMMSFVGATGKAVYDFHIIEEFYRKEISNSFSHKEEDYEKEFGQ*
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