| Basic Information | |
|---|---|
| Taxon OID | 3300004461 Open in IMG/M |
| Scaffold ID | Ga0066223_1090030 Open in IMG/M |
| Source Dataset Name | Marine viral communities from Newfoundland, Canada BC-2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Yale University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1340 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Newfoundland, Canada | |||||||
| Coordinates | Lat. (o) | 47.593411 | Long. (o) | -52.885466 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012624 | Metagenome | 279 | N |
| F015934 | Metagenome / Metatranscriptome | 251 | N |
| F030875 | Metagenome / Metatranscriptome | 184 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0066223_10900301 | F015934 | GGCGG | MRQINELLFTGNHPRLITGASYSIYATSLITGISNATLYRRLKGREEITDWDITPASERNPERYGKKARELSQFNK |
| Ga0066223_10900303 | F012624 | AGG | MLTNYKGNSAHLKALKLARIEQHIADGVVYLSLSLGVVALFTFLNWAMIARYGV* |
| Ga0066223_10900304 | F030875 | GAGG | MKTAKALKIKVITTRPAPKRITQPASHWRDIMGGMKRGHWFEVECETRDDVYNRVGAAANSYCKGRYTFYKTAKNKYIFEIIKG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |