NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065726_18133

Scaffold Ga0065726_18133


Overview

Basic Information
Taxon OID3300004369 Open in IMG/M
Scaffold IDGa0065726_18133 Open in IMG/M
Source Dataset NameSaline microbial communities from the South Caspian sea - cas-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10735
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location NameCaspian Sea
CoordinatesLat. (o)41.916215Long. (o)50.672019Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004475Metagenome / Metatranscriptome436Y
F005745Metagenome / Metatranscriptome391Y
F024789Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0065726_1813310F024789AGGMTEPKIMKMDWRSAGYWPVWKDGKKVWVPKDDGSFNRNTQN*
Ga0065726_181332F004475AGGGGGMTNWTDELNDKQKEDVWNFIVFTVKEIREQIAKDIEATIPLWKEKGLLKSRRTQKAFEASAAIARGQNERI*
Ga0065726_1813321F005745N/AYLKKQVDNGISGIDIMHGHLKFLMLEAEQELDKACQIEEDNDYSDAMESMERKYWEGQCEALANLYSLTYDLSFAIAAKEAANE*
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