NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065726_14778

Scaffold Ga0065726_14778


Overview

Basic Information
Taxon OID3300004369 Open in IMG/M
Scaffold IDGa0065726_14778 Open in IMG/M
Source Dataset NameSaline microbial communities from the South Caspian sea - cas-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15884
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (76.32%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location NameCaspian Sea
CoordinatesLat. (o)41.916215Long. (o)50.672019Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003688Metagenome / Metatranscriptome473Y
F006885Metagenome / Metatranscriptome362Y
F010599Metagenome / Metatranscriptome301Y
F023339Metagenome / Metatranscriptome210Y
F028423Metagenome / Metatranscriptome191Y
F070870Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0065726_147781F023339N/ACIEGNTTNRKGGSQRNGGEVCRQLRAYKKNKKGVQISIVGFGRPKFKEAGQAKTADPVNKTKKCPTCGQVLK*
Ga0065726_1477819F028423AGGGGGMDNLEKNELIQLVNFYKQKLSDAELNLLILQLEINKLNSVVLGLSKEPAKKSK*
Ga0065726_1477820F006885AGGMEYLLIVGLTLLASWSIIKISNKKRMMFLKKHKYRQSHIYEIVKDIAPRQLFDKPKVITQSQKHIQKNMLKVVITEGKAYFILDNVFYVADAIDGRVNEETTKPLDTENMPTKELDKMLSILDDLKQGVGPNDSGSAGDKRV*
Ga0065726_1477825F003688N/AMYTDNMRKVVHSIIPPKDFGVQIIDNDHFLTIKLDEKEFLHMVHDDKISALKYVVKLKKALEECGAIVLVTREAVK*
Ga0065726_1477827F070870GGAGMKKKTKVLVLMVLSLLIAISLWAASNFKKIYDLDIFDVEED*
Ga0065726_1477829F010599GAGMEIMLIIFFATLSFSFGIAYWSTLDKLKKSNFLMAELFIKNKALEDLTFQVKNSAGISDDEIHKENFIKFLSDSRDWAFEYIEQSQKTIKEVSEELKNKGLNNYSDKLLSLLPPTVGEK*
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Institute for Fundamental Biomedical Research
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