NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065726_12185

Scaffold Ga0065726_12185


Overview

Basic Information
Taxon OID3300004369 Open in IMG/M
Scaffold IDGa0065726_12185 Open in IMG/M
Source Dataset NameSaline microbial communities from the South Caspian sea - cas-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26795
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location NameCaspian Sea
CoordinatesLat. (o)41.916215Long. (o)50.672019Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018285Metagenome / Metatranscriptome236N
F020466Metagenome / Metatranscriptome224Y
F056524Metagenome / Metatranscriptome137N
F073415Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0065726_1218516F018285AGGMTSIIYTSPLSLFNDVETDPVTFTHDPIAVALLRSEGDGTVMMHTIDQDPRTLEYIANGDYLQRAKTIREYYKKRLFFGAMSNKFSKTGFRGDLQACLEREDIYTVPSGDIGMLARLPDFYEEDVTRDMLHKECKGNKPKTNSFWADDLTVKYLTKTKSRHGRNRQYCYWFKKGDRALCFYIEGTNPLINLLNDFLEPGKVMQLQGGFSTRVQDGFHFYQGKCKVLV*
Ga0065726_1218525F020466GGAMANINIKYKGLTGLLNDLTIDDGQTMAQLRTAIIADETLNSAYYGRVSIHKNGLVKDSTDDSGTTLVNAGIEAGDIITVSADRNQATRQKSQEMTLDIAQLKKQAGGDTTKPYYRSLNTYDVTILPTRYVNDTVTDNTGDGGDLTQGRPWT*
Ga0065726_1218526F056524N/AMSALLLIQKLIAELDAIENTAPQDENYFKQIEDLAVDDRTCDDYSNTPNEQYADLEAVTSHAGGGVNGPKHAADIRTDSPSLYHYLTQLEHEHGKH*
Ga0065726_121859F073415AGGAGMEGLKITLIAIAGVLAVSSANANPNNEAMKHCLDKVGYDRNAPVENRFEGVDIAAAAKCYQAYKQQVEAVQMANLRDFLRHNPRYRYPGQSMNRCWGKEREMPFTSATISATPYGFTAGVSYKDTMPAGCYENGPWDNREGSHAYDG*
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