Scaffold Ga0065726_12171

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065726_12171

Scaffold Ga0065726_12171

Overview

Basic Information
Taxon OID	3300004369 Open in IMG/M
Scaffold ID	Ga0065726_12171 Open in IMG/M
Source Dataset Name	Saline microbial communities from the South Caspian sea - cas-15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26906
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (61.36%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location Name	Caspian Sea
Coordinates	Lat. (^o)	41.916215	Long. (^o)	50.672019	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039514	Metagenome / Metatranscriptome	163	N
F081074	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_121712	F081074	GAGG	MNQIKQLVIALALLLPLCSLAQREYIDDPALHVHEPMDELTFKHEEISSVRGKPDVFEGYWEINGPYVNNPTVYMRRMLFFVDCSPENFPDSKPIHVALSTIALGDDRGNMIKIYLIPPGTEEWMDWSEVSFITQEHISKICR*
Ga0065726_1217125	F039514	N/A	VRKLLLLLLLPFTAQADYADWDKYDKELFWMSTTAIALDHLTTRDLASRYDEGYRERNLLLGDHPDKDTVDLFFLVNYVTHYYLTDYFQGEHRPVYMMVRLVVNGAATVNNFKIGLGVRF

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