NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062590_101333645

Scaffold Ga0062590_101333645


Overview

Basic Information
Taxon OID3300004157 Open in IMG/M
Scaffold IDGa0062590_101333645 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)709
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameWisconsin, United States
CoordinatesLat. (o)43.2958Long. (o)-89.3799Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001935Metagenome / Metatranscriptome615Y
F091817Metagenome / Metatranscriptome107Y
F101096Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0062590_1013336451F101096N/ALYASLQALKGHVQEYPGCQRFDVFFRAEPEAAVRVHCYTTWDTLEQLEVYLDRGYTFERMLGDVSEEIRLERSMVMEKAF*
Ga0062590_1013336452F091817AGAAGGMADDSPEPPITPAQPLAGYRDIGAPASVRHTRRAVVRAWVILAGLIVLYLAAMLTIYFVEPGLR*
Ga0062590_1013336453F001935N/AVYVKQLSSLEFLTFLAFFGLTLWAAMRLLPGRAPPVRSEPYPDEEIHAHDDKLPKYFVAGGGFLVLGSIHMVVKNLPWTAEWLAGAD
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