NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007811_1000658

Scaffold Ga0007811_1000658


Overview

Basic Information
Taxon OID3300003787 Open in IMG/M
Scaffold IDGa0007811_1000658 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5238
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053079Metagenome / Metatranscriptome141Y
F058734Metagenome / Metatranscriptome134Y
F079412Metagenome115N
F091108Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0007811_10006581F058734N/AIIGNINEFTASEQKTLYSDGADMTTGMYYLVADAKDFVTQGREVIPNLPALRSLTASANISWIITNYRGNRVAFGSASA*
Ga0007811_10006582F091108AGGMNKAFLRRQAASKWKDLQCGIWERWDYRCCYLVIRQLDNGKFKPMIGAMGDLSMPGADLPPAGYHQLNTLEEAKNFLHKYVAYIREVWDKQVLDGRK*
Ga0007811_10006586F079412N/AMINWDTLSLVYSAILDPVYKAKKKRNFVIRIRGVKHGTWNWYSYNSDGAYFVIALKLRIGQFHRVIIHEFRHFIQDKILHVPMTADYEKMYYRHPLEVDARYFENKGLHFARRLYNRIEKQKKTFAILNEYRPKGEKTNRNGNTSRSKLRSKGKGSK*
Ga0007811_10006587F053079N/AMGILPDPNYVPREKVANRFGVMVWDHKTAGTCQVMTGDSFKQAKQYMARPGHRSGIQKLGYRG*
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