NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SLW30_100092

Scaffold SLW30_100092


Overview

Basic Information
Taxon OID3300003650 Open in IMG/M
Scaffold IDSLW30_100092 Open in IMG/M
Source Dataset NameSubglacial freshwater microbial communities from Lake Whillans, Antarctica - 3.0 micron filter
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12633
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Subglacial Freshwater → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Source Dataset Sampling Location
Location NameWest Antarctica
CoordinatesLat. (o)-84.24Long. (o)-153.694Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005167Metagenome / Metatranscriptome410Y
F009741Metagenome / Metatranscriptome313Y
F019092Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
SLW30_10009211F009741GAGGLTQRVEGSYDKMKPWRAPLQPDLVAKRYSYHGPWASNMERLTQQALMVMNIPGKDIQEMVRVPLPQIQLFPDRYGYGPRVQPGIADIVTIDRKYSEPRVSWYSGGPGGYTASSRNDLGSN
SLW30_10009214F005167AGTAGGMAVNSSRSMNTSLNEGATDGKYRKVRPDTEVIPGSGNEETINNRQSLHPFYNYGFVTSEYPNKVNPGK*
SLW30_10009219F019092AGGAGMTIPILGQKKQNNEEMFRLLYCLVCGTLEELPPYDGPLEQDVLLTIACETHVFPSGEPHKGKLFVIPIRAWAHTDSRKEMIRQIRGGGSKGIAEIDDKFYESRSNFMEDAMTCYGQHNKPKDGCVDWHIKQKMLVPNTAKERKEEGMERYADSPGPKTYLCDFCPVAIGVATRKQKLMGMK*
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Institute for Fundamental Biomedical Research
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