NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26082J51739_10031796

Scaffold JGI26082J51739_10031796


Overview

Basic Information
Taxon OID3300003617 Open in IMG/M
Scaffold IDJGI26082J51739_10031796 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1962
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022881Metagenome / Metatranscriptome212N
F063659Metagenome / Metatranscriptome129N
F077038Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
JGI26082J51739_100317962F077038N/AMVRLPDVTSTKVIIPSVLFALLSPAVTGMESFVDRLGMTSVFGILYIIITKGIAKYVIRASEVYLACAMYLVLSSMTKTQDQIVQYTFLYWILFAIIRSQSPLEF*
JGI26082J51739_100317963F063659AGTAGMVGSNLLDYTPIASEPQVIEDYDNEEEEGFVDPNEXXYEDWIAYYSXXLWNNWELYREQCYDNMLPVTLTFSEFCKNEYYY*
JGI26082J51739_100317964F022881N/AMSELPISDQFKEAIAELEGIKTQLNEAQKAIKVLKERETSLKTFIGGYMKAQKIDDVQTRGGTKVTQKTSVKKPAITKKILMDELPNYIDGGQERLNQIIKEIEDKLEPKETSSLQLKLKKKSEE*
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