NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DC01A_1156369

Scaffold DC01A_1156369


Overview

Basic Information
Taxon OID3300003447 Open in IMG/M
Scaffold IDDC01A_1156369 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Douglas Channel, Canada that are oil-degrading - Sample S1-DC01A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)557
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading

Source Dataset Sampling Location
Location NameDouglas Channel, British Columbia, Canada
CoordinatesLat. (o)53.6667Long. (o)-129.1333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023593Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
DC01A_11563691F023593N/AIDEIAQYQADVILETLKEQVEWSIADYDVNGDDFYNLRDYTVYQTVIKLLEQVDLVDVDNYKQNTIISG*
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