NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10001418

Scaffold JGI25922J50271_10001418


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10001418 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6982
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000852Metagenome / Metatranscriptome860Y
F000868Metagenome / Metatranscriptome853Y
F001043Metagenome / Metatranscriptome794Y
F003422Metagenome / Metatranscriptome487Y
F007644Metagenome / Metatranscriptome347Y
F009685Metagenome / Metatranscriptome314Y
F021288Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_1000141810F000868AGGCGGMSFLENENQMVIDAEYSYIGEQLVEEWVNSNLDEGQLYADYRFAEMCDSNYLKGRFNQFYDLNPNDQYYVEWDEEK*
JGI25922J50271_1000141811F021288AGGAGMLGYTQKDLADMTYGVYQADLLIDADENPAIHNYLVTAHDFLQGLWAEGYFDHA*
JGI25922J50271_1000141812F007644GAGGMSKSSHFLEYMKLHLISLEQDLEKNPESINVIDIPGQIEATKHLLSVATDIMNASNERYE
JGI25922J50271_1000141815F009685AGGAGGMKMTDRYVDEVLAEAQRLLWGGSETXNIAAHNMIAKLIKDRMEDQKNS*
JGI25922J50271_1000141816F000852AGGAMTTKREYLKQQGITVGARGRFSSAAKQALSEATQKGLTFTAEKPTKK*
JGI25922J50271_100014184F003422AGGAMSVGWCIILGMSNELMSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTKLTCPCGRDTTLVSVEHATIQPTTTTKEEQMEETTIGSDALHSPAVEYNPNLLVTYKVIHGYSDPEFTTAKVSSLEWDLHNARQAQKTNGVLTNKISLVKDIITEAYSESEDQETLRAIAEALDIELTRQVEFTCTIEVSGTMEIDLLSDWGNDLEDEVTDNLYVDSQSGRIEIGDIEICHVREA*
JGI25922J50271_100014185F000311GAGMYFELTAPDRLSMERAYWDAQITGLDPQAMTPLTFNIGTGSIEKVSRIRDKYNLSESYVSEYEATGYTGR*
JGI25922J50271_100014186F001043GGAGMSDYKDGFDDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGGTL*
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