NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10000566

Scaffold JGI25922J50271_10000566


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10000566 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10826
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (73.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004840Metagenome / Metatranscriptome421Y
F006744Metagenome / Metatranscriptome365Y
F009530Metagenome / Metatranscriptome316Y
F017995Metagenome / Metatranscriptome237Y
F019325Metagenome / Metatranscriptome230Y
F074872Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_1000056610F004840N/AMYKLTCAYDSNAPHWSAEYENEYGAWENFFLFTDWGMANEYSTVNLYTPSGKCYTKVFYRSGMVAVK*
JGI25922J50271_1000056611F017995GGAMAKVKELIEIVSAECDECGGAGFIFFGNELAYDVEPCDCIANVEDELTVDWVNE*
JGI25922J50271_1000056612F006744AGGMNLEEFKAHVIAQREATKAEALSVLSATISTTKERENLNG*
JGI25922J50271_1000056614F019325AGGTGGMTTLNETLFSTIVHEYHNGGVKSSYGLDAYTRKELLKYLFSSKSCNCINCL*
JGI25922J50271_1000056618F009530AGGMTITYSIWQGSRLLSIDNVAHEMKAIDHLIDSLNASNLGKKVKFSANVQSIKTGDNK*
JGI25922J50271_100005662F074872N/AMLKYYPNKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKGNSLDNS*
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