NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25910J50241_10055301

Scaffold JGI25910J50241_10055301


Overview

Basic Information
Taxon OID3300003388 Open in IMG/M
Scaffold IDJGI25910J50241_10055301 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1214
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011150Metagenome / Metatranscriptome294Y
F013409Metagenome / Metatranscriptome271N
F055677Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
JGI25910J50241_100553011F055677N/AMKEKIKQVNXLCXANGAYINQHGKKTVSAWSKVKYFREVFGTEFGXNTMIVEHSDRYVIVKCLIMGYDPERIIATGYSXQFRDKPGYLEIAETFATTRALSFFGICLEDLTSKEEYEDLEIPVQPMNG
JGI25910J50241_100553012F013409AGTAGMKIILTIIMMNGTIHNLGYEIDSYSPRICDKLFDKITYIGKASGKNKYGTFYKSKEVFAHSCSIEKTTKGNNERKNKTS*
JGI25910J50241_100553013F011150N/AMFRNMDINYYHKXHDKIKEQFRYDIIMSKIKQREDKLFRNMFIKISLIITAIVLLVTVVF
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